Categories

All (22)

Acoustic classification (7)

Acoustics processing (5)

Audio event classification (1)

Benchmarked Dataset (1)

Call Identification (2)

Call Identification, Signal Processing (1)

Camera trap animal/person/vehicle detection (1)

Camera trap species classification (1)

Ecological Niche Modeling (1)

Embeddings / representation learning, Call Identification (2)

Habitat suitability (1)

Image classification (4)

Image detection (1)

Image segmentation (1)

Marine mammal photo identification (1)

Mobile App (2)

Model API (3)

Model Weights (1)

Package or Library (12)

Plant stress phenotyping (1)

Research Compendium (2)

Signal Processing (1)

Sleep Scoring (2)

Species Identification (5)

Species distribution model (2)

Timeseries segmentation (2)

Tonal Call Detection (1)

Tree crown delineation (1)

Web GUI (1)

Model Zoo

BioCLIP

Image classification

Species Identification

Package or Library

BioCLIP is a computer vision model, fine tuned for species identification.

BioLingual

Acoustics processing

Call Identification

Text prompt to search through audio by species, call type, or verbal description. Also receives audio input.

BirdNET

Acoustic classification

Species Identification

Package or Library

BirdNET is a deep learning model/toolchain for automated bird sound identification from audio recordings.

BirdSET ConvNeXT

Acoustic classification

Species Identification

BirdSET ConvNeXT is a ConvNeXt baseline fine-tuned on BirdSet subsets (e.g., XCM/XCL) for bird-audio classification benchmarks.

DeepForest

Image segmentation

Tree crown delineation

Package or Library

DeepForest is a deep-learning package for tree crown delineation from RGB imagery (often airborne/drone) with prebuilt models and training workflows.

Ecological Niche Modelling With R

Species distribution model

Ecological Niche Modeling

Research Compendium

A workflow to simplify the process of estimating spatial probability distributions (species presence/absence) given a set of environmental parameters.

FrogID App

Acoustic classification

Species Identification

An app for identifying frogs to species level worldwide

HappyWhale

Image classification

Marine mammal photo identification

AI-assisted individual ID of humpback whale flukes and multi-species dorsal fin ID

MegaDetector

Image detection

Camera trap animal/person/vehicle detection

Package or Library

MegaDetector is an object detector for camera-trap images that finds animals/people/vehicles and is commonly used to filter blank images.

Merlin Sound ID Bird App

Acoustic classification

Species Identification

An app for identifying birds to species level worldwide

Perch

Acoustic classification

Embeddings / representation learning, Call Identification

Perch is a foundation bioacoustics model that produces embeddings (and species logits) for transfer learning and bioacoustic classification.

SatBird

Species distribution model

Habitat suitability

Benchmarked Dataset

SatBird is a dataset and benchmark models for the task of predicting bird species encounter rates jointly at a specific location using remote sensing data.

SpeciesNet

Image classification

Camera trap species classification

Package or Library

SpeciesNet is a camera-trap species classifier used with MegaDetector in an ensemble pipeline to assign species/taxa labels (2,000+ labels).

SurfPerch

Acoustics processing

Embeddings / representation learning, Call Identification

SurfPerch is a Perch-derived embedding model adapted for coral reef soundscapes to support efficient transfer learning for reef bioacoustics.

Voxaboxen

Acoustic classification

Call Identification

Package or Library

Voxaboxen is a deep learning framework designed to find the start and stop times of (possibly overlapping) sound events in a recording.

YAMNet

Acoustics processing

Audio event classification

Package or Library

YAMNet is an AudioSet-trained audio event classifier (521 classes) that outputs class probabilities and embeddings.

noisereduce

Acoustics processing

Signal Processing

Package or Library

noisereduce is a domain-general noise reduction tool for bioacoustics and other time domain signals.

opensoundscape

Acoustic classification

Call Identification, Signal Processing

Package or Library

Python package for analyzing bioacoustic data

silbido profundo

Acoustics processing

Tonal Call Detection

Package or Library

An open source package for the use of deep learning to detect odontocete whistles

somnotate

Timeseries segmentation

Package or Library

Probabilistic sleep scoring software to combine linear discriminant analysis (LDA) and hidden Markov models (HMM).

xPLNet

Image classification

Plant stress phenotyping

Research Compendium

AI classification of leaf pictures into different environmental stresses/diseases. Explainable model. Developped with soybean leaves, works with other species.

yasa

Timeseries segmentation

Package or Library

YASA (Yet Another Spindle Algorithm) is a command-line sleep analysis toolbox in Python with automatic sleep staging and signal processing functions.