Model Zoo

BioCLIP
Image classification
Species Identification
Package or Library
BioCLIP is a computer vision model, fine tuned for species identification.

BioLingual
Acoustics processing
Call Identification
Model API
Text prompt to search through audio by species, call type, or verbal description. Also receives audio input.

Ecological Niche Modelling With R
Species distribution model
Ecological Niche Modeling
Research Compendium
A workflow to simplify the process of estimating spatial probability distributions (species presence/absence) given a set of environmental parameters.

FrogID App
Acoustic classification
Species Identification
Mobile App
An app for identifying frogs to species level worldwide

HappyWhale
Image classification
Marine mammal photo identification
Web GUI
AI-assisted individual ID of humpback whale flukes and multi-species dorsal fin ID

Merlin Sound ID Bird App
Acoustic classification
Species Identification
Mobile App
An app for identifying birds to species level worldwide

SatBird
Species distribution model
Habitat suitability
Benchmarked Dataset
SatBird is a dataset and benchmark models for the task of predicting bird species encounter rates jointly at a specific location using remote sensing data.

Voxaboxen
Acoustic classification
Call Identification
Package or Library
Voxaboxen is a deep learning framework designed to find the start and stop times of (possibly overlapping) sound events in a recording.

noisereduce
Acoustics processing
Signal Processing
Package or Library
noisereduce is a domain-general noise reduction tool for bioacoustics and other time domain signals.

opensoundscape
Acoustic classification
Call Identification, Signal Processing
Package or Library
Python package for analyzing bioacoustic data

silbido profundo
Acoustics processing
Tonal Call Detection
Package or Library
An open source package for the use of deep learning to detect odontocete whistles

somnotate
Timeseries segmentation
Sleep Scoring
Package or Library
Probabilistic sleep scoring software to combine linear discriminant analysis (LDA) and hidden Markov models (HMM).

xPLNet
Image classification
Plant stress phenotyping
Research Compendium
AI classification of leaf pictures into different environmental stresses/diseases. Explainable model. Developped with soybean leaves, works with other species.

yasa
Timeseries segmentation
Sleep Scoring
Package or Library
YASA (Yet Another Spindle Algorithm) is a command-line sleep analysis toolbox in Python with automatic sleep staging and signal processing functions.
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